A list of repositories used in research in the Scientific Computing Department follows. A link to relevant publications/preprints is referenced.
2025¶
- A software benchmark for cardiac elastodynamics Aróstica et al. (2025)
- Arrhythmic Mitral Valve Syndrome: Insights from Left Ventricular End-Systolic Shape Analysis Monopoli et al. (2025)
- DeepValve: an automatic detection pipeline for the mitral valve in cardiac magnetic resonance imaging Monopoli et al. (2025)
2024¶
- The sodium/glucose cotransporter 2 inhibitor Empagliflozin inhibits long QT 3 late sodium currents in a mutation specific manner Lunsonga et al. (2025)
- An electrodiffusive network model with multicompartmental neurons and synaptic connections Sætra & Mori (2024)
- Automatic motion estimation with applications to hiPSC-CMs Finsberg et al. (2024)
- A computational study of right ventricular mechanics in a rat model of pulmonary arterial hypertension Odeigah et al. (2024)
2023¶
- Medical image registration using optimal control of a linear hyperbolic transport equation with a DG discretization Zapf et al. (2023)
- ffian: Fluid Flow In Astrocyte Networks Sætra et al. (2023)
- A novel density based approach for topology optimization of Stokes flow Haubner et al. (2023)
- The directional flow generated by peristalsis in perivascular networks—Theoretical and numerical reduced-order descriptions Gjerde et al. (2023)
2022¶
- Multi-compartmental model of glymphatic clearance of solutes in brain tissue Poulain et al. (2022)
- Geometrically reduced modelling of pulsatile flow in perivascular networks Daversin-Catty et al. (2022)
- Nitsche method for solving Navier-Stokes with slip boundary conditions Gjerde & Scott (2022)
- HAZniCS - Software Components for Multiphysics Problems Budisa et al. (2022)
2021¶
- An electrodiffusive neuron-extracellular-glia model for exploring the genesis of slow potentials in the brain Sætra et al. (2021)
2018¶
- Efficient estimation of personalized biventricular mechanical function employing gradient-based optimization Finsberg et al. (2018)
Missing a repository?¶
If you repository is missing from the list, go to Add new repository
- Aróstica, R., Nolte, D., Brown, A., Gebauer, A., Karabelas, E., Jilberto, J., Salvador, M., Bucelli, M., Piersanti, R., Osouli, K., Augustin, C., Finsberg, H., Shi, L., Hirschvogel, M., Pfaller, M., Africa, P. C., Gsell, M., Marsden, A., Nordsletten, D., … Bertoglio, C. (2025). A software benchmark for cardiac elastodynamics. Computer Methods in Applied Mechanics and Engineering, 435, 117485. https://doi.org/10.1016/j.cma.2024.117485
- Monopoli, G., Sadeghinia, M. J., Westrum Aabel, E., Ribe, M., Castrini, A. I., Hasselberg, N., Bugge, C., Five, C., Haugaa, K., Balaban, G., & others. (2025). Arrhythmic Mitral Valve Syndrome: Insights from Left Ventricular End-Systolic Shape Analysis. International Conference on Functional Imaging and Modeling of the Heart, 26–36.
- Monopoli, G., Haas, D., Singh, A., Aabel, E. W., Ribe, M., Castrini, A. I., Hasselberg, N. E., Bugge, C., Five, C., Haugaa, K., & others. (2025). DeepValve: The first automatic detection pipeline for the mitral valve in Cardiac Magnetic Resonance imaging. Computers in Biology and Medicine, 192, 110211.
- Lunsonga, L. C., Fatehi, M., Long, W., Barr, A. J., Gruber, B., Chattopadhyay, A., Barakat, K., Edwards, A. G., & Light, P. E. (2025). The sodium/glucose cotransporter 2 inhibitor Empagliflozin inhibits long QT 3 late sodium currents in a mutation specific manner. Journal of Molecular and Cellular Cardiology, 198, 99–111. https://doi.org/10.1016/j.yjmcc.2024.11.014
- Sætra, M. J., & Mori, Y. (2024). An electrodiffusive network model with multicompartmental neurons and synaptic connections. PLOS Computational Biology, 20(11), 1–33. 10.1371/journal.pcbi.1012114
- Finsberg, H. N. T., Charwat, V., Healy, K. E., & Wall, S. (2024). Automatic motion estimation with applications to hiPSC-CMs. Biomedical Physics & Engineering Express. 10.1088/2057-1976/ad7268
- Odeigah, O. O., Kwan, E. D., Garcia, K. M., Finsberg, H., Valdez-Jasso, D., & Sundnes, J. (2024). A computational study of right ventricular mechanics in a rat model of pulmonary arterial hypertension. Frontiers in Physiology, 15, 1360389.
- Zapf, B., Haubner, J., Baumgärtner, L., & Schmidt, S. (2023). Medical image registration using optimal control of a linear hyperbolic transport equation with a DG discretization.
- Sætra, M. J., Ellingsrud, A. J., & Rognes, M. E. (2023). Neural activity induces strongly coupled electro-chemo-mechanical interactions and fluid flow in astrocyte networks and extracellular space–A computational study. PLOS Computational Biology, 19(7), 1–31. 10.1371/journal.pcbi.1010996
- Haubner, J., Neumann, F., & Ulbrich, M. (2023). A Novel Density Based Approach for Topology Optimization of Stokes Flow. SIAM Journal on Scientific Computing, 45(2), A338–A368. 10.1137/21M143114X
- Gjerde, I. G., Rognes, M. E., & Sánchez, A. L. (2023). The directional flow generated by peristalsis in perivascular networks–Theoretical and numerical reduced-order descriptions. Journal of Applied Physics, 134(17), 174701. 10.1063/5.0160334
- Poulain, A., Riseth, J., & Vinje, V. (2022). Multi-compartmental model of glymphatic clearance of solutes in brain tissue. https://hal.archives-ouvertes.fr/hal-03789563
- Daversin-Catty, C., Gjerde, I. G., & Rognes, M. E. (2022). Geometrically Reduced Modelling of Pulsatile Flow in Perivascular Networks. Frontiers in Physics, 10. 10.3389/fphy.2022.882260
- Gjerde, I., & Scott, L. (2022). Nitsche’s method for Navier–Stokes equations with slip boundary conditions. Mathematics of Computation, 91(334), 597–622. 10.1090/mcom/3682
- Budisa, A., Hu, X., Kuchta, M., Mardal, K.-A., & Zikatanov, L. (2022). HAZniCS – Software Components for Multiphysics Problems. arXiv. 10.48550/ARXIV.2210.13274