Software#
A list scientific software (and corresponding publication) developed by personnel in the Scientific Computing Department.
ADIOS4DOLFINx: A framework for checkpointing in FEniCS ADIOS4DOLFINx [Dok24]
SMART: Spatial Modeling Algorithms for Reactions and Transport smart [LDF+23]
Intracranial Pulsation: brainpulse [CVR22]
Software Components for Multiphysics Problems: HAZniCS [BHK+22]
Multi-point constraints with DOLFINx: DOLFINx_MPC
Network models for FEniCS: Graphnics
Missing a package?#
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References#
Ana Budisa, Xiaozhe Hu, Miroslav Kuchta, Kent-Andre Mardal, and Ludmil Zikatanov. HAZniCS – Software Components for Multiphysics Problems. 2022. URL: https://arxiv.org/abs/2210.13274, doi:10.48550/ARXIV.2210.13274.
Marius Causemann, Vegard Vinje, and Marie E. Rognes. Human intracranial pulsatility during the cardiac cycle: a computational modelling framework. bioRxiv, 2022. doi:10.1101/2022.05.19.492650.
Jørgen Schartum Dokken. ADIOS4DOLFINx: A framework for checkpointing in FEniCS. Journal of Open Source Software, 9(96):6451, 2024. doi:10.21105/joss.06451.
Justin G. Laughlin, Jørgen S. Dokken, Henrik N.t. Finsberg, Emmet A. Francis, Christopher T. Lee, Marie E. Rognes, and Padmini Rangamani. SMART: Spatial Modeling Algorithms for Reactions and Transport. Journal of Open Source Software, 8(90):5580, 2023. doi:10.21105/joss.05580.
Kent-André Mardal, Marie E. Rognes, Travis B. Thompson, and Lars Magnus Valnes. Getting started: from T1 images to simulation, pages 23–46. Springer International Publishing, Cham, 2022. doi:10.1007/978-3-030-95136-8_3.